FastQCFastQC Report
Thu 24 Sep 2015
ECOLI_R1.qc.fq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ECOLI_R1.qc.fq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4991513
Filtered Sequences 0
Sequence length 25-100
%GC 50

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 1454405 3.2990484 4.735921 95-96
Produced by FastQC (version 0.10.1)